Literature Workspace

Computational audit documents of this collection's research case, linked at a fixed commit of the research repository. They are not references of the library, experiments or an official resubmission, and they are not counted above. They are read in the “Robustness and limits” step of the case trail and on the case page.

• ReportRevised Track 2 research report, October 24 Latest prepared report. Its preparation or publication is not an official resubmission.
• Decision matrixCandidate decision matrix One page: verified product, exact versus other-model evidence, exposure, function, current gate and decisive experiment. Not an efficacy ranking.
• Audit guideBounded exploratory robustness audit What is stable, what changes and what remains insufficient; reproduction commands and execution provenance.
• ProtocolSensitivity protocol (post-hoc, exploratory) Frozen before these calculations, after the original results were known. Not a prospective preregistration.
• Protocol amendmentProtocol amendment 01 Recorded before execution: omits a shared-denominator genome-wide correlation, adds an equal-context-weighted PTC summary.
• ResultsSensitivity results (machine-readable) Source inventory and hashes, PTC rows and contexts, every deletion, GSE65145 features and contrasts, stable / changes / insufficient.
• ResultsPTC nearest measured rows (CSV) The 12 measured variant rows, their six-base contexts and paired values.
• ResultsGSE65145 feature threshold grid (CSV) Reciprocal-overlap thresholds 95% to 100% and the features each selects.
• VerificationDeterministic replay check of the four original analyses Cached public inputs, current non-isolated environment; not a clean-environment or fresh-download rerun.
• Change logReport revision changes Separates the new diagnostics from source verification that was already public.
• ManifestRevision manifest Document inputs and outputs with SHA-256 values.
• Evidence ficheProduct, formulation and exposure evidence fiche Product status and exposure anchors already public at the base commit; references P1-P16.
• AppendixSource evidence appendix (FDA records, Omachi Figure 6) Source checks already public at the base commit; not new achievements of this revision.
• Editorial noteVideo clarification package Prepared editorial changes; not a YouTube update, a new export or a resubmission.
• Original reportOriginal Submission 1 report (frozen) The report as originally submitted; unchanged by the revision.