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Hypotheses

Statements under research, with what informs and what limits them.

A hypothesis here is a research-management object: it names its evidence, the gaps that keep it open and a status (proposed, conditional, deprioritized, withdrawn). No status means validated; biological validation is work this project has not performed.

Proposed
3
Conditional
0
Deprioritized
0
Withdrawn
0
Status All ProposedConditionalDeprioritizedWithdrawn
Hypothesis Proposed In the Evidence Graph

Research candidates stay conditional: amlexanox and montelukast remain conditional and gentamicin plus mefloquine remains an experimental branch; no exact-genotype pharmacological rescue is established.

Montelukast is a reporter-dependent hit in a three-reporter NMD screen (MVA-NMD-003); amlexanox has functional evidence in one gene and negative evidence with toxicity in another (MVA-AMLEXANOX-010); rapamycin lowers, not raises, the BUB1B locus RNA signal in a fibroblast model (MVA-RAP-GSE65145-001); immunotherapy results concern tumor control, not disease rescue (MVA-IMMUNE-011).

Open on: Checkpoint competence and chromosome segregation have not been measured for either variant (Measurement proposed) · Drug responses need viability, proliferation and completed-division controls (Measurement proposed) · No exact L737* readthrough measurement exists (Open) · Readthrough-combination evidence comes from another gene and stop context (Open)

Status history and provenance
  • Proposed · biolab ·

Curated: Case page, 01 Summary and findings (card "Research candidates")

Evidence notes 0

Researchers' annotations on this item. They are the researcher's reading, not the content of a publication.

No notes yet.

Hypothesis Proposed In the Evidence Graph

Preserving RNA leaves the stop codon: NMD modulation alone cannot establish a useful L737* protein product.

The L737* allele raises an RNA and translation question first. Readthrough needs exact-context and functional validation; the exact L737* experiment has not been performed (record MVA-L737-NMD-FIRST-001), the readthrough table has no exact L737* context (MVA-RT-002) and the endogenous-protein evidence for readthrough combinations comes from another gene and stop context (MVA-RT-TRANSFER-009).

Open on: No exact L737* readthrough measurement exists (Open) · L737* NMD susceptibility is predicted, not measured (Measurement proposed) · Readthrough-combination evidence comes from another gene and stop context (Open)

Status history and provenance
  • Proposed · biolab ·

Curated: Case page, 01 Summary and findings (card "L737* / RNA & translation")

Evidence notes 0

Researchers' annotations on this item. They are the researcher's reading, not the content of a publication.

No notes yet.

Hypothesis Proposed In the Evidence Graph

Abundance is a starting point: matched N1002K protein abundance must be followed by independent functional measurements.

No exact-N1002K functional experiment was located; comparator variants rescued the checkpoint at matched abundance while other equally expressed mutants failed chromosome congression (MVA-N1002K-GATE-002). Stability and residual function remain unresolved, and arimoclomol has no target-engagement evidence at relevant exposure (MVA-ARI-007). Arrest duration is a checkpoint control, not segregation fidelity (MVA-CTRL-006).

Open on: Arimoclomol: no target engagement at relevant exposure, no exact-variant rescue (Open) · Checkpoint competence and chromosome segregation have not been measured for either variant (Measurement proposed) · N1002K stability and residual function are unresolved (Measurement proposed)

Status history and provenance
  • Proposed · biolab ·

Curated: Case page, 01 Summary and findings (card "N1002K / protein function")

Evidence notes 0

Researchers' annotations on this item. They are the researcher's reading, not the content of a publication.

No notes yet.

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New hypothesis

State it as a testable claim and link the evidence that informs or limits it. It starts as proposed.

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KBot · Research guide

Prewritten answers · Evidence linked

KBot

Hello, I am KBot, the BioLab research guide. I can explain the research cases, the Literature Workspace, the Evidence Graph and the analysis tools, and where each one stops. Choose a topic below. These are prewritten explanations, not a live AI consultation.

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